2024 Genome-wide analysis

Genome-wide analysis

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August undefined, 2024

WebSep 9, 2024 · Genome-wide analysis of trehalose-6-phosphate phosphatases (TPP) gene family in wheat indicates their roles in plant development and stress response. 16 March 2024. Linying Du, Shumin Li, … Hude Mao. Genome-wide identification and expression analysis of the xyloglucan endotransglucosylase/hydrolase gene family in poplar.

CT-Based Phenotyping and Genome-Wide Association Analysis of …

WebMay 8, 2024 · The WRKY gene family is widespread in plants, which plays key roles in plant development and stress response. Although WRKY transcription factors have been widely characterized in many plants, a genome-wide analysis of the WRKY gene family is lacking in Oryza rufipogon. In this study, we identified 101 O. rufipogon WRKY (OrWRKY) … WebApr 5, 2024 · Genome-wide analysis of Nuclear Factor Y genes and functional investigation of watermelon ClNF-YB9 during seed development. Author links open overlay panel Qin Feng a 1, Ling Xiao a 1, Jiafa Wang a 1, Jie Wang a, Chenyang Chen a, Jianyang Sun a, Xixi Wu a, Man Liu a, Xian Zhang a, Shujuan Tian a b, Li Yuan a b. Show more. redhill bs40

Genome-wide complex trait analysis - Wikipedia

WebGenome-wide complex trait analysis ( GCTA) Genome-based restricted maximum likelihood ( GREML) is a statistical method for variance component estimation in genetics … WebAug 17, 2024 · What is a genome-wide association study? A genome-wide association study is an approach that involves rapidly scanning markers across the complete sets of DNA, or genomes, of many people to find … WebApr 14, 2024 · The genome-wide analysis revealed the difference in number of genes and genome size of S. tuberosum and A. thaliana. The identified number of DREB genes in S. tuberosum (66) is greater than that in Arabidopsis (56) which may be due to the difference in their genome sizes. ribosomes in red blood cells

Genome-wide association study - Wikipedia

WebAug 8, 2006 · Recent completion of whole genome sequences of model plants Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) allows genome-wide analysis and comparison of the bHLH family in flowering plants. We have identified 167 bHLH genes in the rice genome, and their phylogenetic analysis indicates that they form well-supported … WebJan 3, 2024 · The MYB transcription factors comprise one of the largest superfamilies in plants that have been implicated in the regulation of plant-specific metabolites and responses to biotic and abiotic stresses. Here, we present the first comprehensive genome-wide analysis and functional characterization of the CtMYB family in Carthamus … ribosomes interesting factsWebJan 22, 2010 · Through a genome-wide bioinformatics analysis, we have identified the complete repertoire of the EAR repressome in Arabidopsis (Arabidopsis thaliana) comprising 219 proteins belonging to 21 different transcriptional regulator families. Approximately 72% of these proteins contain a LxLxL type of EAR motif, 22% contain a DLNxxP type of EAR … ribosomes in both animal and plant

"WebApr 13, 2024 · Therefore, the genome-wide analysis of the DIR members in Oryza is important for obtaining beneficial DIR genes and thus for breeding improvements to crops. In this study, the phylogenetic relationship, chromosomal location, duplication events and selective forces of the DIR gene family in two cultivated rice species and seven wild rice … " - Genome-wide analysis

Genome-wide analysis

Genome-wide in silico analysis leads to identification of …

WebGenome-wide pathway analysis can investigate the GWAS SNPs through a SNP→gene→pathway approach to discover the overrepresented pathways in the GWAS data, which would consider rare variants, multi-omics, and interactions. In the current study, ICSNPathway analysis identified 18 candidate SNPs and 10 candidate pathways that … WebMar 1, 2024 · In this study, a genome-wide analysis of MYB TFs in potato identified a total of 217 MYB genes. A comprehensive investigation of the phylogenetic relationship, …

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WebOct 24, 2024 · Polyploidization may cause reshuffling of gene expression accompanied by changes in chromatin-structure dynamic. In eukaryotes, gene expression is regulated via the complex interplay between transcription factors and cis-regulatory DNA elements (CREs) in regions of open chromatin.We reveal that chromatin accessibility, displaying distinct … WebApr 9, 2024 · Saline-alkali stress seriously affects the yield and quality of crops, threatening food security and ecological security. Improving saline-alkali land and increasing effective cultivated land are conducive to sustainable agricultural development. Trehalose, a nonreducing disaccharide, is closely related to plant growth and development and stress …

WebMar 19, 2008 · Genome-wide association (GWA) studies use high-throughput genotyping technologies to assay hundreds of thousands of single-nucleotide polymorphisms … WebJan 10, 2024 · An initial comprehensive genome-wide analysis demonstrated that a total of 9 ZmMTs were identified from the recently released maize genome (Zm, B73_RefGen_v4) in Ensembl Plants. The members of MT genes range from 4 (Hevea brasiliensis) to 14 (Oryza sativa) in higher plants in the previous reports [15, 16, 20, 23, 29, 33, 34, 64, 65].

WebJan 11, 2024 · We performed genome-wide analysis of cfDNA from 521 samples and analyzed sequencing data from an additional 2147 samples, including healthy individuals and patients with 11 different cancer types. … WebJan 19, 2024 · We then performed transcriptome sequencing (RNA-seq) and deep sequencing of intermediate-sized RNAs (50 to 300 nt, respectively) of the resulting …

WebMar 22, 2024 · Genome-wide association studies (GWAS) help scientists identify genes associated with a particular disease (or another trait). This method studies the entire set …

WebApr 5, 2024 · Genome-wide identification, gene structure, and motif contribution in representative Cucurbitaceae species Arabidopsis NF-Y proteins were used as query … ribosomes in bacteria cellWebAug 23, 2024 · We present a large-scale well-powered genome-wide association study meta-analysis of individual differences in reading- and language-related skills (word reading, nonword reading, spelling, phoneme awareness, and nonword repetition) in tens of thousands of participants. The findings prompt a major reevaluation of prior literature … ribosomes in a prokaryotic cellWebApr 11, 2024 · A genome-wide association study (abbreviated GWAS) is a research approach used to identify genomic variants that are statistically associated with a risk for a disease or a particular trait. … ribosomes in chloroplasts and mitochondriaWebJul 8, 2024 · Genome-wide analysis of MYB transcription factors and their responses to salt stress in Casuarina equisetifolia Yujiao Wang, Yong Zhang, Chunjie Fan, … redhill busesWebApr 1, 2024 · Affiliations 1 State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.; 2 Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural … ribosomes in the cellWebApr 7, 2024 · Genome-wide compendium of somatic mutation patterns in human cancer. We analyzed 61.2 million mutations from 3949 patients of 19 cancer types (top). Using a sliding-window approach, we detected … red hill boys brigadeWebGenome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization. Wheat (Triticum … ribosomes in cytosol